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- BEAST Software - Bayesian Evolutionary Analysis Sampling Trees | BEAST . . .
BEAST is built on a large body of prior work and appropriate citations for individual modules, models and components will be listed when BEAST is run BEAST-Users mailing list Users are strongly advised to join the BEAST mailing-list This will be used to announce new versions and advise users about bugs and problems
- First Tutorial | BEAST Documentation
An introductory tutorial to getting started with BEAST This tutorial describes the use of BEAUti and BEAST to analyse some primate sequences and estimate a phylogenetic tree It will take you through the process of importing an alignment, making choices about the model, generating a BEAST XML file You will then run BEAST
- Estimating rates and dates from time-stamped sequences | BEAST . . .
To inform BEAUti BEAST about the sampling dates of the sequences, go to the Tips menu and select the “Use tip dates” option By default all the taxa are assumed to have a date of zero (i e the sequences are assumed to be sampled at the same time; BEAST considers the present or most recent sampling time as time 0)
- Frequently Asked Questions | BEAST Documentation
We have renamed the release that would have been called BEAST v1 10 5 as BEAST X v10 5 0 This is to distinguish it from the independent project called BEAST 2 – see: https: www beast2 org These projects have been running in parallel for many years which has restricted this BEAST project to using the v1 major release version and only
- Phylogeographic diffusion in discrete space | BEAST Documentation
The first step will be to convert an alignment file in fasta format into a BEAST XML input file This is done using the program BEAUti (this stands for Bayesian Evolutionary Analysis Utility) This is a user-friendly program for setting the evolutionary model and options for the MCMC analysis
- Downloading and installing BEAST on UNIX Linux
BEAST can be downloaded from the following link: BEAST X v10 5 0-beta5 - UNIX Linux version 46 2MB; This will download a compressed tar archive (a ‘ tgz’ file)
- BEAST v1. 8. 4 released | BEAST Documentation
Download BEAST v1 8 4 binaries for Mac, Windows and UNIX Linux Version 1 8 4 released 17th June 2016 New Features: New structured list of citations printed to screen before running Option ('-citation_file') to write citation list to file
- Downloading and installing BEAST on Windows
Installing BEAST Unzip the downloaded compressed ZIP archive (currently BEAST v10 5 0-beta5 zip) The unzipped files contain executable binaries for BEAST, BEAUti, LogCombiner, TreeAnnotator and TreeStat Double-clicking on those files will automatically start the corresponding program BEAGLE acceleration library
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