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- BioMart - Ensembl
Tables of Ensembl data can be downloaded via the highly customisable BioMart data mining tool The easy-to-use web-based tool allows extraction of data without any programming knowledge or understanding of the underlying database structure
- Bioconductor - biomaRt
Examples of BioMart databases are Ensembl, COSMIC, Uniprot, HGNC, Gramene, Wormbase and dbSNP mapped to Ensembl These major databases give biomaRt users direct access to a diverse set of data and enable a wide range of powerful online queries from gene annotation to database mining
- BioMart
The BioMart project provides free software and data services to the international scientific community in order to foster scientific collaboration and facilitate the scientific discovery process The project adheres to the open source philosophy that promotes collaboration and code reuse
- Learning to use biomaRt
biomaRt provides an interface to a growing collection of databases implementing the BioMart software suite The package enables retrieval of large amounts of data in a uniform way without the need to know the underlying database schemas or write complex SQL queries
- BioMart - Wikipedia
BioMart is a community-driven project to provide a single point of access to distributed research data The BioMart project contributes open source software and data services to the international scientific community
- BioMart help | HUGO Gene Nomenclature Committee
BioMart is a generic data management system which offers a range of advanced query interfaces and administration tools The system comes with built-in support for query-optimisation and database federation
- Introduction to BioMart | Griffith Lab
Ensembl BioMart is a powerful web tool (with API) for performing complex querying and filtering of the various Ensembl databases (Ensembl Genes, Mouse Strains, Ensembl Variation, and Ensembl Regulation)
- biomaRt package - RDocumentation
Examples of BioMart databases are Ensembl, COSMIC, Uniprot, HGNC, Gramene, Wormbase and dbSNP mapped to Ensembl These major databases give biomaRt users direct access to a diverse set of data and enable a wide range of powerful online queries from gene annotation to database mining
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