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- Nextflow - Nextflow workshop
Nextflow # This tutorial aims to get you familiarized with Nextflow After this course you should be able to understand workflow pipelines that are written in Nextflow and write simple pipelines yourself! Here’s an overview of the materials that we will cover: General introduction to Nextflow Building blocks of Nextflow: processes, channels and operators, workflows and modules Executing
- Introduction to NextFlow - Bioinformatics Workbook
Nextflow features Fast protyping – let’s you write a computational pipeline from smaller tasks Reproducibility – supports Docker and Singularity containers Portable – can run locally, Slurm, SGE, PBS, and cloud (Google, Kubernetes and AWS) Unified parallelism – can process chunks through the entire pipeline (QC -> align -> call snps) Continuous checkpoints – each chunk and process
- Tips and cheatsheet for Nextflow - GitHub
DSL2 beginners' guide by Harriz Lazaris for Nextflow Nextflow channel operation cheatsheet Practical guide to convert DSL1 to DSL2 Nextflow Slack for all questions and to connect with others
- Nextflow workshop
We would like to show you a description here but the site won’t allow us
- Nextflowのチュートリアル - Zenn
Nextflow環境のTips 6 Tips for Setting Up Your Nextflow Dev Environment ← Dockerコンテナを扱うtipsやlong-runningなパイプラインのモニタリング方法について参考になりそう $ nextflow console で 'Nextflow REPL console'を利用できる。 スクリプトの作成 スクリプトを作成する。
- Preparing for strict syntax — Nextflow documentation
Preparing for strict syntax This page explains how to update Nextflow scripts and config files to adhere to the Nextflow language specification, also known as the strict syntax
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