使用JASPAR预测转录因子结合位点 - 知乎 JASPAR是一个开源的转录因子结合位点信息数据库,以position frequency matrices (PFMs) 和TF flexible models(TFFMs)的形式记录了6大类物种的转录因子的DNA结合偏好信息。
JASPAR - About JASPAR is the largest open-access database of curated and non-redundant transcription factor (TF) binding profiles from six different taxonomic groups
科研必备:JASPAR一个好用的靶基因转录因子预测数据库 JASPAR 是一个定期维护、开放存取的数据库,它以 PFMs 的形式存储人工编辑的高质量 TFs DNA 结合图谱。 过去二十年来,JASPAR 始终坚持其核心原则: (i) 提供高质量的 TF 结合图谱; (ii) 促进开放存取; (iii) 确保易于使用。
JASPAR 2024: 20th anniversary of the open-access database of . . . This new JASPAR release comes with a new computational tool to extract predicted JASPAR TFBSs intersecting with a user-provided input set of genomic regions TFBSs can be further filtered by providing TF names, JASPAR matrix IDs and TFBS score thresholds