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- Kraken2 - Johns Hopkins University
Kraken 2 is the newest version of Kraken, a taxonomic classification system using exact k-mer matches to achieve high accuracy and fast classification speeds This classifier matches each k-mer within a query sequence to the lowest common ancestor (LCA) of all genomes containing the given k-mer
- Kraken 2 Databases - Johns Hopkins University
Source (99 KB): Kraken2's source code and README The current official version of Kraken 2 is v2 0 8-beta (released April 25th, 2019) However, additional fixes changes are in the newest github version The source code for the current release and the newest version are both available at the Kraken 2 GitHub repository Pre-built Kraken 2 Databases
- Kraken2 Protocol - Johns Hopkins University
Published on September 28, 2022, the protocol explains how Kraken 2, Bracken, KrakenUniq, and KrakenTools are used for both microbiome analysis and pathogen detection We provide jupyter notebooks for users to run the full Kraken 2 protocol
- Kraken2 - Johns Hopkins University
Source (99 KB): Kraken2's source code and README The current official version of Kraken 2 is v2 0 8-beta (released April 25th, 2019) However, additional fixes changes are in the newest github version The source code for the current release and the newest version are both available at the Kraken 2 GitHub repository Pre-built Kraken 2 Databases
- Kraken2 - Johns Hopkins University
Kraken 2 taxonomic sequence classification system As of 06 05 2020, the manual is located in the Kraken 2 Github Wiki
- How to Choose Your Metagenomics Classification Tool
From 2014-2018, the Center for Computational Biology has released 4 different metagenomics classification software packages: Kraken, KrakenUniq, Kraken 2, and Centrifuge
- KrakenTools - Johns Hopkins University
KrakenTools is a suite of individual scripts designed for use with Kraken, KrakenUniq, Kraken2, and Bracken These scripts provide users of the above classification abundance estimation tools additional support primarily for downstream analysis of Kraken Bracken results
- Kraken - Johns Hopkins University
Kraken 2 is a newer implementation of Kraken that uses much less memory with a higher FP rate than Kraken 1 KrakenUniq Kraken 2 now also includes the kmer-counting features of KrakenUniq (see Kraken 2's Webpage for additional details)
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