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- Expasy - ProtParam
ProtParam [Documentation Reference] is a tool which allows the computation of various physical and chemical parameters for a given protein stored in UniProtKB or for a user entered protein sequence
- Expasy - ProtParam documentation
The parameters computed by ProtParam include the molecular weight, theoretical pI, amino acid composition, atomic composition, extinction coefficient, estimated half-life, instability index, aliphatic index and grand average of hydropathicity (GRAVY)
- ProtParam References - Expasy
ProtParam Home Documentation Reference Contact ProtParam - Reference Gasteiger E , Hoogland C , Gattiker A , Duvaud S , Wilkins M R , Appel R D , Bairoch A ; Protein Identification and Analysis Tools on the Expasy Server; (In) John M Walker (ed): The Proteomics Protocols Handbook, Humana Press (2005) pp 571-607 Full text - Copyright Humana
- Expasy - Translate tool
Translate is a tool which allows the translation of a nucleotide (DNA RNA) sequence to a protein sequence
- Expasy - ProtScale
ProtScale allows you to compute and represent the profile produced by any amino acid scale on a selected protein An amino acid scale is defined by a numerical value assigned to each type of amino acid The most frequently used scales are the hydrophobicity or hydrophilicity scales and the secondary structure conformational parameters scales, but many other scales exist which are based on
- Expasy - Compute pI Mw tool
Compute pI Mw is a tool which allows the computation of the theoretical isoelectric point (pI) and molecular weight (Mw) of a list of UniProtKB entries or user entered sequences
- Expasy - SIB Swiss Institute of Bioinformatics
Since 1993 Expasy has been the reference of Bioinformatics Resources Learn everything about Expasy
- Protein Analysis Tools on the ExPASy Server 571 52
a denatured protein can be computed (see Note 6) Two tables are pro-duced by ProtParam, the first one showing the computed values based on the assump-tion that all cysteine residues appear as half cystines, and the second one assuming that no cysteine
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