- SONGDONGYUAN1994 scDesign3 - GitHub
The R package scDesign3 is an all-in-one single-cell data simulation tool by using reference datasets with different cell states (cell types, trajectories or and spatial coordinates), different modalities (gene expression, chromatin accessibility, protein abundance, DNA methylation, etc), and complex experimental designs
- scDesign3 generates realistic in silico data for multimodal . . . - Nature
We present a statistical simulator, scDesign3, to generate realistic single-cell and spatial omics data, including various cell states, experimental designs and feature modalities, by learning
- scDesign2: a transparent simulator that generates high-fidelity single . . .
Unlike existing simulators including our previous simulator scDesign, scDesign2 achieves six properties: protocol adaptiveness, gene preservation, gene correlation capture, flexible cell number and sequencing depth choices, transparency, and computational and sample efficiency
- statistical simulator scDesign for rational scRNA-seq experimental . . .
ScDesign is a simulation-based experimental design framework that has multiple advantages in real practice First, scDesign is protocol- and data-adaptive It learns scRNA-seq data characteristics from rapidly accumulating public scRNA-seq data generated under diverse settings
- scDesign3 Quickstart - Bioconductor
scDesign3 is a unified probabilistic framework that generates realistic in silico high-dimensional single-cell omics data of various cell states, including discrete cell types, continuous trajectories, and spatial locations by learning from real datasets
- scDesign3 Quickstart • scDesign3 - Dongyuan Song
scDesign3 is a unified probabilistic framework that generates realistic in silico high-dimensional single-cell omics data of various cell states, including discrete cell types, continuous trajectories, and spatial locations by learning from real datasets
- scDesign3 generates realistic in silico data for multimodal single-cell . . .
We present a statistical simulator, scDesign3, to generate realistic single-cell and spatial omics data, including various cell states, experimental designs and feature modalities, by learning interpretable parameters from real data
- Bioconductor - scDesign3
We present a statistical simulator, scDesign3, to generate realistic single-cell and spatial omics data, including various cell states, experimental designs, and feature modalities, by learning interpretable parameters from real data
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