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- GitHub - Xinglab rmats-turbo
The major difference between rMATS turbo and rMATS is speed and space usage rMATS turbo is 100 times faster and the output file is 1000 times smaller than rMATS
- rMATS rMATS-turbo
11 26 2014 Official announcement for the release of replicate MATS (rMATS): We have developed replicate MATS (rMATS) to detect differential alternative splicing from replicate RNA-seq data MATS 3 0 0 and beyond is rMATS Please download the latest version (currently MATS 3 0 8) from our website 04 09 2014 Release of PrimerSeq,
- 六千字深度解析| 可变剪切分析神器rmats环境配置与使用教程
在 可变剪切分析神器——rMATs 中我们分享过:作者在先前研究两个样本RNA-seq数据之间的 MATS (multivariate analysis of transcript splicing)的基础上,针对重复(replicate)的样本进行分析,开发了一种新的方法称为 rMATS。
- rMATS-turbo: an efficient and flexible computational tool for . . .
Since 2011, our laboratory has developed and maintained Replicate Multivariate Analysis of Transcript Splicing (rMATS), a computational tool for discovering and quantifying alternative splicing
- 详细介绍最新版可变剪接软件rMATS - 简书
rMATS是检测可变剪切事件的常用软件之一,其可以从RNA测序数据中,检测出多种类型的可变剪切事件,并提供了定量和组间差异分析的功能,可对生物学重复的样本进行组间分析。
- Linux环境:可变剪切分析软件rMATS安装、使用与解读-CSDN博客
本文详细指导了在Linux环境下rMATS软件的安装、依赖项配置、从fastq文件分析流程、结果解读以及可视化,包括BLAS LAPACK、GSL、Anaconda环境设置和rMATS的使用技巧。
- 可变剪切分析工具:rMATS - 知乎
run_rmats是使用build_rmats使用的conda环境调用 rmats py 的包装器。 它还提供 setup_environment sh,可以对其进行修改以处理在运行rmats之前可能需要的其他设置(例如环境模块)。
- Differential Alternative Splicing Analysis with rMATS
rMATS is a computational tool for detection and quantification of differential alternative splicing events rMATS stands for "replicate Multivariate Analysis of Transcript Splicing"
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