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Introduction - Brainstorm - University of Southern California Brainstorm follows a continuous development and release model Brainstorm is updated on a rolling basis to ensure that users have access to the latest features, improvements and bug fixes as soon as they are ready These updates are regularly published on the Brainstorm GitHub repository, and the version in the download page are updated everyday
Tutorials - Brainstorm - University of Southern California Brainstorm coordinate systems MRI segmentation: CAT12, FreeSurfer, BrainSuite, BrainVISA, FastSurfer, CIVET Using the anatomy templates Warping the anatomy templates Group analysis: Subjects coregistration Digitize EEG electrodes and head shape Real-time head positioning (CTF MEG) Head motion detection (MEG) Recordings Montage editor
Installation - Brainstorm - University of Southern California Source: brainstorm_yymmdd_src zip - For execution within Matlab Binary: brainstorm_yymmdd_bin zip - Compiled version with no Matlab license required Source + binary: brainstorm_yymmdd zip - Everything in the same zip file Unzip it somewhere on your computer, for example: Windows: My documents\brainstorm3
Brainstorm Brainstorm is a collaborative, open-source application dedicated to the analysis of brain recordings: MEG, EEG, fNIRS, ECoG, depth electrodes and animal electrophysiology
WorkshopLA2024 - Brainstorm - University of Southern California brainstorm_db: your Brainstorm database (which should be empty for now) workshopLaxMorning zip: Dataset used during the workshop session Afternoon Session (SEEG Analysis) In this session of the workshop, we will be working on a SEEG dataset recorded at the Epilepsy Monitoring Unit at UTHealth Houston
Tutorials IeegContactLocalization - Brainstorm - University of Southern . . . SPM: If you are running Brainstorm from the MATLAB environment, you need to have the SPM12 toolbox installed on your computer, as a Brainstorm plugin or a custom installation With the stand-alone compiled version of Brainstorm: all the needed SPM scripts have been compiled and included in the executable This is required for two purposes:
Tutorials SourceEstimation - Brainstorm - University of Southern California Amplitude threshold: in the Surface tab of the main Brainstorm window, to apply a threshold on the source map, as explained for the 3-D cortex view above Current time: shows the current time stamp in the data recordings, at the top-right of the main Brainstorm window You also use the right left arrows to move in time, or click anywhere in the
Tutorials CreateProtocol - Brainstorm - University of Southern California If Brainstorm or Matlab crashes before the database structure is correctly saved, the files that are displayed in the Brainstorm database explorer may differ from what is actually on the disk When this happens, you can force Brainstorm to rebuild the structure from the files on the hard drive: right-click on a folder > Reload
Tutorials SegCAT12 - Brainstorm - University of Southern California CAT is a SPM12 toolbox that is fully interfaced with Brainstorm It can replace efficiently FreeSurfer for generating the cortical surface from any T1 MRI It runs on any OS in about 1 hour , instead of the typical 24hr FreeSurfer recon-all processing
Tutorials ChannelFile - Brainstorm - University of Southern California When trying to bring external data into the Brainstorm environment, a common source of confusion is the difference between the two popup menus Review and Import: Review raw file: Allows you to create a link to your original continuous data file It reads the header and sensor information from the file but does not copy the recordings in the