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ASLPrep: A Robust Preprocessing Pipeline for ASL Data — aslprep version . . . ASLPrep: A Robust Preprocessing Pipeline for ASL Data This pipeline is developed by the Satterthwaite lab at the University of Pennsylvania for use at the The Lifespan Informatics and Neuroimaging Center at the University of Pennsylvania, as well as for open-source software distribution
Processing pipeline details — aslprep version documentation ASLPrep can process data from any of the big three manufacturers (Siemens, Philips, GE), but the GE ASL product sequence is unique in that it typically only produces a single deltaM or CBF volume (optionally along with an M0 volume)
Usage Notes — aslprep version documentation If you have a question about using ASLPrep, please create a new topic on NeuroStars with the “Software Support” category and the “aslprep” tag The ASLPrep developers follow NeuroStars, and will be able to answer your question there
aslprep. config module — aslprep version documentation aslprep config module A Python module to maintain unique, run-wide aslprep settings This module implements the memory structures to keep a consistent, singleton config
aslprep. interfaces. cbf module — aslprep version documentation aslprep interfaces cbf module Interfaces for calculating CBF class BASILCBF(**inputs) [source] Bases: FSLCommand Wrapped executable: oxford_asl Apply Bayesian Inference for Arterial Spin Labeling (BASIL)
aslprep. interfaces. bids module — aslprep version documentation Bases: DerivativesDataSink Store derivative files A child class of the niworkflows DerivativesDataSink, using aslprep’s configuration files Mandatory Inputs: in_file (a list of items which are a pathlike object or string representing an existing file) – The object to be saved
ASLPrep: A Robust Preprocessing Pipeline for ASL Data ASLPrep adapts the preprocessing steps depending on the input dataset and provide results as good as possible independently of scanner make and scanning parameters With the BIDS input, little or no parameter are required allowing ease of operation
aslprep. utils. cbf module — aslprep version documentation aslprep utils cbf module Functions for calculating CBF calculate_deltam_pasl(X, cbf, att, abat, abv) [source] Specify a model for use with scipy curve fitting The model is fit separately for each voxel This model is used to estimate cbf, att, abat, and abv for multi-PLD PCASL data Parameters: cbf (float) – Cerebral blood flow